Pruning the content indexes along with the data is the default behavior.
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From the CommCell Browser, navigate to Policies | Storage Policies.
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Right-click the <Storage Policy> that is enabled for Content Indexing, and then click Properties.
The Storage Policy Properties dialog box appears.
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Click the Content Indexing tab.
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Click the Retention subtab.
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Click Retain the index as per data retention rule.
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Click OK.